Differences

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--- users:catalogue:programs:mr_bayes [2018/06/14 07:52] – created xavi
+++ users:catalogue:programs:mr_bayes [2019/09/03 11:01] (current) – admins_ceab
@@ Line 1: / Line 1: @@
+###MrBayes
 Currently is installed MrBayes 3.2.6 version working with mpi 2.0
-This one of the programs that we recommend to use with screen (enlace a la página)
+This one of the programs that we recommend to use with [[users:guides:screen | screen]].
-Once entered in cluster-ceab we open a screen session (for further details see [[Screen]])
+Once entered in cluster-ceab we open a screen session (for further details see [[users:guides:screen | Screen]])
-Then qlogin
+**without mpi**
+Init a qlogin
 ```
 qlogin -l h_vmem=4G
 ```
-or a qlogin with the number of processors with mpi environment
+and once in the node
 ```
-qlogin -l h_vmem=4G -pe mpi 6
+/home/soft/mrbayes-3.2.6/src/mb
 ```
-once in the node if we don't need mpi we can run MrBayes directly
-/home/soft/mrbayes-3.2.6/src/mb
+**with mpi**
-but if we have reserved some processor to use mpi we need to declare two variables first, just copy this two lines in the terminal.
+init a qlogin with the number of processors with mpi environment
+```
+qlogin -l h_vmem=4G -pe mpi 6
+```
+to use mpi we need to declare two variables first, just copy this two lines in the terminal.
 ```
@@ Line 51: / Line 60: @@
 if you have started screen you can close this terminal while the program is running and reatach it later to see if is finished.
-don't forget to close the screen session when finish
+**Don't forget to close the screen session when finish:**
-close MrBayes with 'q' and 'exit' twice, the first one to finish the qlogin and free the reserved resources and the second one to clos the screen terminal.
+Close MrBayes with **q** and then **exit** twice, the first one to finish the qlogin and free the reserved resources and the second one to clos the screen terminal.