Wiki cluster CEAB (antic cblabdoc)

User Tools

Site Tools

Trace:
public:move2

Differences

This shows you the differences between two versions of the page.

Link to this comparison view

Next revision		Previous revision
public:move2 [2026/01/28 15:18] – created admins_ceabpublic:move2 [2026/01/29 15:16] (current) – [Using move2 on Slurm batch jobs] admins_ceab
Line 3: Line 3:
 These instructions describe how to use the R package **move2** on the HPC cluster: These instructions describe how to use the R package **move2** on the HPC cluster:
  
-+ ** [[#using-move2-on-interactive-sessions | Interactive sessions]] ** ++ [[#using-move2-on-interactive-sessions | Interactive sessions]] 
-+ ** [[#using-move2-on-slurm-batch-jobs | Slurm batch jobs]] **++ [[#using-move2-on-slurm-batch-jobs | Slurm batch jobs]]
  
 --- ---
Line 131: Line 131:
  
 Because the system is headless, //Movebank credentials// must be provided via //environment variables// (**lost on shell session exit**). Because the system is headless, //Movebank credentials// must be provided via //environment variables// (**lost on shell session exit**).
 +
 +**NEVER hard-code passwords in your R scripts !!**
  
 === 1. Prepare Movebank credentials === === 1. Prepare Movebank credentials ===
Line 136: Line 138:
 Before submitting the job, export your credentials in the shell. Before submitting the job, export your credentials in the shell.
    
-**Do not hard-code passwords in R scripts !!** 
  
 ``` ```
-export MOVEBANK_USER="jgarriga" +export MOVEBANK_USER="your_movebank_user_name" 
-export MOVEBANK_PASSWORD="YOUR_PASSWORD"+export MOVEBANK_PASSWORD="your_movebank_user_password"
 ``` ```
  
public/move2.1769613534.txt.gz · Last modified: by admins_ceab